Started 6 days 2 hr ago
Took 23 min

Success Build #1523 (Jul 12, 2019 5:47:56 PM)

<a title="PT-4028 Improve handling of non-standard GEDCOM files" href="https://github.com/phenotips/phenotips/pull/2893">PR #2893</a>: PT-4028 Improve handling of...
Changes
  1. PT-4028 Improve handling of non-standard GEDCOM files (commit: 73cbdc4) (detail / githubweb)

GitHub pull request #2893 of commit 73cbdc471ba5ef6739c45c1a621b9aaf72d33e64, no merge conflicts.

Revision: ae27b4b6f3d733050a6a1e96d28584b452608f96
  • refs/remotes/origin/pr/2893/merge
Test Result (no failures)

    Module Builds

    Success PhenoTips - Application configuration0.85 sec
    Success PhenoTips - Application configuration - Java APIs14 sec
    Success PhenoTips - Application configuration - Data migrations3.5 sec
    Success PhenoTips - Application configuration - Documents providing the configuration classes and their display code1.2 sec
    Success PhenoTips - Component Manager Registry7.5 sec
    Success PhenoTips - HSQLDB Database26 sec
    Success PhenoTips - Diagnosis Suggestion Service0.8 sec
    Success PhenoTips - Diagnosis Suggestion Java Code14 sec
    Success PhenoTips - Diagnosis Suggestion- Documents providing phenotype and disease suggestions5.1 sec
    Success PhenoTips - Entity access rules0.91 sec
    Success PhenoTips - Entity access rules - Java APIs12 sec
    Success PhenoTips - Entity access rules - REST services9.3 sec
    Success PhenoTips - Family Studies0.87 sec
    Success PhenoTips - Family Studies - Java APIs21 sec
    Success PhenoTips - Family Studies - Data migrations12 sec
    Success PhenoTips - Family Studies - REST services10 sec
    Success PhenoTips - Family Studies - UI5.7 sec
    Success PhenoTips - Gene Panels0.88 sec
    Success PhenoTips - Gene Panels - APIs26 sec
    Success PhenoTips - Gene Panels - REST services11 sec
    Success PhenoTips - Gene Panels - UI4.6 sec
    Success PhenoTips - Jetty0.89 sec
    Success PhenoTips - Jetty Lifecycle Listener - Log Writer9 sec
    Success PhenoTips - Jetty Lifecycle Listener - Open Browser4 sec
    Success PhenoTips - Jetty Resources2.6 sec
    Success PhenoTips - Joda Time Script Service6.4 sec
    Success PhenoTips - NCBI eUtils Services0.82 sec
    Success PhenoTips - NCBI eUtils Services - Java APIs3.7 sec
    Success PhenoTips - NCBI eUtils Services - Documents providing PubMed relevant articles suggestions1.2 sec
    Success PhenoTips - OBO to Solr conversion6 sec
    Success PhenoTips - Patient access rules0.91 sec
    Success PhenoTips - Patient access rules - Java APIs10 sec
    Success PhenoTips - Patient access rules - Migrations8.2 sec
     PhenoTips - Patient access rules - REST services (didn’t run)
    Success PhenoTips - Patient access rules - Wiki Documents6.1 sec
    Success PhenoTips - Patient contacts info8.9 sec
    Success PhenoTips - Patient data1 sec
    Success PhenoTips - Patient data - Java APIs15 sec
    Success PhenoTips - Patient data - Default implementation for the Java APIs23 sec
    Success PhenoTips - Extra fields for patient data0.9 sec
    Success PhenoTips - Patient data - Solr indexing10 sec
    Success PhenoTips - Patient data - Data migrations5 sec
    Success PhenoTips - Patient data - Page Objects10 sec
    Success PhenoTips - Patient Data - REST services12 sec
    Success PhenoTips - Patient data sharing0.85 sec
    Success PhenoTips - Patient data sharing - Push Java APIs12 sec
    Success PhenoTips - Patient data sharing - Push Configuration UI4.6 sec
    Success PhenoTips - Patient data sharing - Receiver Java APIs7.9 sec
    Success PhenoTips - Patient data sharing - Receiver UI4.9 sec
    Success PhenoTips - Patient data sharing - Secure data storage API6.6 sec
    Success PhenoTips - Patient data sharing - Communication Protocol Details3.4 sec
     PhenoTips - Patient data - Functional Tests (didn’t run)
    Success PhenoTips - Patient data - Documents providing the patient class, sheet and display code7 sec
    Success PhenoTips - Patient measurements0.9 sec
    Success PhenoTips - Patient measurements - Java APIs10 sec
    Success PhenoTips - Patient measurements - Data migrations3.7 sec
     PhenoTips - Patient measurements - JS and CSS Resources (didn’t run)
     PhenoTips - Patient Measurements - REST services (didn’t run)
    Success PhenoTips - Patient measurements - Documents providing the measurements functionality in the UI3.5 sec
    Success PhenoTips - Record Locking0.9 sec
    Success PhenoTips - Various Tools18 sec
    Success PhenoTips - Pedigree - JS and CSS Resources1 min 2 sec
     PhenoTips - Annotation Services - Neural Concept Recognizer (didn’t run)
     PhenoTips - Annotation Services (didn’t run)
    Success PhenoTips - Security - Auditing support0.81 sec
    Success PhenoTips - Security - Auditing support - Backend code9.6 sec
    Success PhenoTips - Security - Auditing support - Frontend sources3.5 sec
    Success PhenoTips - Security - Auditing support - REST code8.2 sec
    Success PhenoTips - Security - Authorization APIs7.9 sec
    Success PhenoTips - Base War package9.4 sec
    Success PhenoTips - Various Java components0.85 sec
    Success PhenoTips - Utilities - Concurrency locking29 sec
    Success PhenoTips - Consents0.89 sec
    Success PhenoTips - Consents - Java APIs10 sec
    Success PhenoTips - Consents - REST Services6.4 sec
    Success PhenoTips - Consents - Frontend sources3.8 sec
    Success PhenoTips - Data model constants4.3 sec
    Success PhenoTips - Easy encryption support3.6 sec
    Success PhenoTips - Encrypted XProperty3.5 sec
    Success PhenoTips - Data export0.84 sec
    Success PhenoTips - Data export - Spreadsheet Export APIs11 sec
    Success PhenoTips - Data export - Documents providing the Export functionality6.4 sec
    Success PhenoTips - Default administrative account and default rights1.4 sec
    Success PhenoTips - Distribution packages0.88 sec
    Success PhenoTips - DMG Distribution2.1 sec
    Success PhenoTips - Generic Entities APIs0.85 sec
    Success PhenoTips - Entities - Java APIs21 sec
    Success PhenoTips - Entities - Documents3.9 sec
    Success PhenoTips - Extra fields for patient data - Medication0.88 sec
    Success PhenoTips - Extra fields for patient data - Medication - Java APIs9.7 sec
    Success PhenoTips - Extra fields for patient data - Medication - Documents providing the medication data class and display code3.9 sec
    Success PhenoTips - General navigation0.91 sec
    Success PhenoTips - Navigation - Java APIs1.3 sec
    Success PhenoTips - Navigation - Testing Page Objects7.8 sec
     PhenoTips - Navigation - Functional Tests (didn’t run)
    Success PhenoTips - Navigation - Documents providing the homepage and the All Data page7 sec
    Success PhenoTips - Parent POM4.2 sec
    Success PhenoTips - Pedigree0.81 sec
    Success PhenoTips - Pedigree - Java APIs1.3 sec
    Success PhenoTips - Pedigree - Application Documents4.5 sec
    Success PhenoTips - Misc - Support for proxy authentication1.6 sec
    Success PhenoTips - Record Locking - API9.4 sec
    Success PhenoTips - Record Locking - UI - Documents providing record locking functionality4.6 sec
    Success PhenoTips - Resource packages0.96 sec
    Success PhenoTips - Common code for REST services10 sec
    Success PhenoTips - RPM Distribution2 min 44 sec
    Success PhenoTips - Security0.95 sec
    Success PhenoTips - Security - Bridge between the old XWiki security interfaces and the new security components9.1 sec
    Success PhenoTips - Skin0.78 sec
    Success PhenoTips - Skin - Java APIs1.3 sec
    Success PhenoTips - Skin - Documents providing the custom Skin5.6 sec
    Success PhenoTips - Standalone Distribution28 sec
    Success PhenoTips - Studies - Java APIs7.1 sec
    Success PhenoTips - Studies - Migrations3.5 sec
    Success PhenoTips - Application interface7.1 sec
    Success PhenoTips - User - Profile - UI3.6 sec
    Success PhenoTips - Various utilities0.9 sec
    Success PhenoTips - War package20 sec
    Success PhenoTips - UI Widgets0.86 sec
    Success PhenoTips - Widget - Java APIs1.3 sec
    Success PhenoTips - UI Widgets - JS and CSS Resources1.3 sec
    Success PhenoTips - UI Widgets - Documents providing various widgets10 sec
    Success PhenoTips - Utilities - XLIFF APIs36 sec
    Success PhenoTips - Phenotype suggest service0.96 sec
    Success PhenoTips - Phenotype suggest service - Java code14 sec
    Success PhenoTips - Phenotype suggest service - Document providing phenotype suggestions8.4 sec
     PhenoTips - Solr Access Service (didn’t run)
     PhenoTips - Solr Access Service - Java code (didn’t run)
     PhenoTips - Solr Access Service - Documents providing phenotype and disease suggestions (didn’t run)
    Success PhenoTips - Solr configuration files6.3 sec
    Success PhenoTips - Specificity Meter0.85 sec
    Success PhenoTips - Specificity Meter - Java APIs10 sec
    Success PhenoTips - Specificity Meter - Documents providing the UI1.2 sec
    Success PhenoTips - Storage migrator0.87 sec
    Success PhenoTips - Storage migrators - Java APIs8.7 sec
    Success PhenoTips - Storage migrators - Attachments0.84 sec
    Success PhenoTips - Storage migrators - Attachments - DataBase store3.4 sec
    Success PhenoTips - Storage migrators - Attachments - Filesystem store3.5 sec
    Success PhenoTips - Storage migrators - Attachments - Generic migrator4.2 sec
    Success PhenoTips - Studies0.87 sec
    Success PhenoTips - Studies - Wiki Documents3.4 sec
    Success PhenoTips - Users and Groups0.86 sec
    Success PhenoTips - Users and Groups - Java APIs9.7 sec
    Success PhenoTips - Users and Groups - REST6.2 sec
    Success PhenoTips - Users and Groups - Wiki Documents1.2 sec
    Success PhenoTips - Vocabularies0.9 sec
    Success PhenoTips - Vocabularies - APIs19 sec
    Success PhenoTips - Vocabularies - REST services12 sec
    Success PhenoTips - Vocabularies - Documents providing the patient class, sheet and display code1.2 sec
    Success PhenoTips - Vocabularies - Chemical Entities of Biological Interest0.9 sec
    Success PhenoTips - Vocabularies - Chemical Entities of Biological Interest integration - APIs7.8 sec
    Success PhenoTips - Vocabularies - Ethnicity Ontology integration0.88 sec
    Success PhenoTips - Vocabularies - Ethnicity Ontology integration - APIs5.3 sec
    Success PhenoTips - Vocabularies - Ethnicity Ontology Integration - WikiPedia HTML parser1.5 sec
    Success PhenoTips - Vocabularies - HUGO Gene Nomenclature Committee (GeneNames) integration0.86 sec
    Success PhenoTips - Vocabularies - HUGO Gene Nomenclature Committee (GeneNames) integration - APIs8.1 sec
    Success PhenoTips - Vocabularies - HUGO Gene Nomenclature Committee (GeneNames) integration - Online service0.88 sec
    Success PhenoTips - Vocabularies - HUGO Gene Nomenclature Committee (GeneNames) integration - Online service - APIs8.7 sec
     PhenoTips - Vocabularies - HUGO Gene Nomenclature Committee (GeneNames) integration - Documents providing services (didn’t run)
    Success PhenoTips - Vocabularies - Human Phenotype Ontology integration0.93 sec
    Success PhenoTips - Vocabularies - Human Phenotype Ontology integration - Annotations for disease vocabularies9.1 sec
    Success PhenoTips - Vocabularies - Human Phenotype Ontology integration - APIs11 sec
    Success PhenoTips - Vocabularies - Human Phenotype Ontology integration - French translation8.9 sec
    Success PhenoTips - Vocabularies - Human Phenotype Ontology integration - German translation8.7 sec
    Success PhenoTips - Vocabularies - Human Phenotype Ontology integration - Italian translation8.9 sec
    Success PhenoTips - Vocabularies - Human Phenotype Ontology integration - Russian translation8.5 sec
    Success PhenoTips - Vocabularies - Human Phenotype Ontology integration - Spanish translation9.5 sec
    Success PhenoTips - Vocabularies - Human Phenotype Ontology integration - Documents providing HPO services8.4 sec
    Success PhenoTips - Vocabularies - Online Mendelian Inheritance in Man integration0.86 sec
    Success PhenoTips - Vocabularies - Online Mendelian Inheritance in Man integration - APIs4.7 sec
     PhenoTips - Vocabularies - Online Mendelian Inheritance in Man integration - Documents providing services (didn’t run)
    Success PhenoTips - Vocabularies - OncoTree integration0.86 sec
    Success PhenoTips - Vocabularies - OncoTree integration - APIs8 sec
    Success PhenoTips - Vocabularies - ORDO integration0.79 sec
    Success PhenoTips - Vocabularies - ORDO integration - APIs5.2 sec
     PhenoTips - Vocabularies - ORDO integration - Documents providing services (didn’t run)
    Success PhenoTips - Vocabularies - Support for translating vocabularies0.85 sec
    Success PhenoTips - Vocabularies - Support for translating vocabularies - XLIFF translations10 sec
    Success XWiki - Locks11 sec
    Success XWiki Platform - SVG tools4.6 sec
    Success XWiki Platform - Core - Users - Parent POM0.84 sec
    Success XWiki Platform - Core - Users - API8.9 sec
    Success XWiki Platform - Core - Users - Wiki4.1 sec
    Success XWiki Translation Manager4.1 sec